Transcript: lnc-UPK3BL2-1:6

Basic information

LNCipedia transcript ID: lnc-UPK3BL2-1:6 
LNCipedia gene ID: lnc-UPK3BL2-1
Location (hg38): chr7:102483344-102543764
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3569 bp
Exons: 26
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000481893.1
Alternative gene names: ENSG00000272949.1; RP11-514P8.8; AC093668.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6279.6143 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UPK3BL2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA4B-1:3
4.0 lnc-RASA4B-1:3
4.1 lnc-RASA4B-1:3
5.0 lnc-RASA4B-1:3
5.1 lnc-UPK3BL2-1:3
5.2 lnc-UPK3BL2-1:6