Transcript: lnc-UPP2-2:1

Basic information

LNCipedia transcript ID: lnc-UPP2-2:1 
LNCipedia gene ID: lnc-UPP2-2
Location (hg38): chr2:157876707-157877587
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 276 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003916; NONHSAT075074
Alternative gene names: XLOC_001720; linc-UPP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7765 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UPP2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UPP2-1:1
3.1 lnc-UPP2-2:1
4.0 lnc-UPP2-2:1
4.1 lnc-UPP2-2:1
5.0 lnc-UPP2-2:1
5.1 lnc-UPP2-2:1
5.2 lnc-UPP2-2:1