Transcript: lnc-UQCRFS1-3:21

Basic information

LNCipedia transcript ID: lnc-UQCRFS1-3:21 
LNCipedia gene ID: lnc-UQCRFS1-3
Ensembl Gene ID: ENSG00000266893
Ensembl Transcript ID: ENST00000589999
Location (hg38): chr19:28491864-28632728
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064043; ENST00000589999.1
Alternative gene names: ENSG00000266893.1; AC005616.1; AC005394.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.5513 non-coding 
CPAT coding probability 4.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UQCRFS1-3:21 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-2:2
4.0 lnc-UQCRFS1-2:2
4.1 lnc-UQCRFS1-3:21
5.0 lnc-UQCRFS1-3:21
5.1 lnc-SCGB2B2-120:17
5.2 lnc-UQCRFS1-3:21