Transcript: lnc-UQCRFS1-3:22

Basic information

LNCipedia transcript ID: lnc-UQCRFS1-3:22 
LNCipedia gene ID: lnc-UQCRFS1-3
Location (hg38): chr19:28546091-28547176
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT064045
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -403.449 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UQCRFS1-3:22 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-14:1
4.0 lnc-UQCRFS1-14:1
4.1 lnc-UQCRFS1-3:22
5.0 lnc-UQCRFS1-3:22
5.1 lnc-SCGB2B2-120:18
5.2 lnc-UQCRFS1-3:22