Transcript: lnc-UQCRFS1-3:7

Basic information

LNCipedia transcript ID: lnc-UQCRFS1-3:7 
LNCipedia gene ID: lnc-UQCRFS1-3
Ensembl Gene ID: ENSG00000267243
Ensembl Transcript ID: ENST00000592716
Location (hg38): chr19:28437641-28468384
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064040; ENST00000592716.1
Alternative gene names: ENSG00000267243.1; AC005307.3; ENSG00000267243.5; ENSG00000267243.6; AC005307.4; AC005381.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.4319 non-coding 
CPAT coding probability 5.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UQCRFS1-3:7 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-3:7
4.0 lnc-UQCRFS1-3:7
4.1 lnc-UQCRFS1-3:7
5.0 lnc-UQCRFS1-3:7
5.1 lnc-SCGB2B2-120:25
5.2 lnc-UQCRFS1-3:7