Transcript: lnc-URGCP-2:2

Basic information

LNCipedia transcript ID: lnc-URGCP-2:2 
LNCipedia gene ID: lnc-URGCP-2
Ensembl Gene ID: ENSG00000273432
Ensembl Transcript ID: ENST00000454572
Location (hg38): chr7:43951910-44019151
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2076 bp
Exons: 9
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454572.1
Alternative gene names: ENSG00000273432.1; RP5-1165K10.2; AC004951.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 286.1283 coding 
CPAT coding probability 98.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-URGCP-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-URGCP-2:2
4.0 lnc-URGCP-2:2
4.1 lnc-URGCP-2:2
5.0 lnc-URGCP-2:2
5.1 lnc-TNS3-65:3
5.2 lnc-URGCP-2:2