Transcript: lnc-USP13-8:2

Basic information

LNCipedia transcript ID: lnc-USP13-8:2 
LNCipedia gene ID: lnc-USP13-8
RefSeq ID: NR_110060
Location (hg38): chr3:179899537-179921899
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110060; NR_110060.1
Alternative gene names: ; PEX5L-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.9466 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP13-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP13-2:5
4.0 PEX5L-AS2:5
4.1 PEX5L-AS2:5
5.0 PEX5L-AS2:5
5.1 lnc-ACTL6A-14:2
5.2 lnc-USP13-8:2