Transcript: lnc-USP28-1:1

Basic information

LNCipedia transcript ID: lnc-USP28-1:1 
LNCipedia gene ID: lnc-USP28-1
Ensembl Gene ID: ENSG00000256603
Ensembl Transcript ID: ENST00000543486
Location (hg38): chr11:113770393-113771691
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 586 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543486.1; RP11-667M19.2-001; OTTHUMT00000398705.1; NONHSAT024257
Alternative gene names: ENSG00000256603.1; RP11-667M19.2; OTTHUMG00000168192.1; AP003170.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7699 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP28-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP28-1:1
4.0 lnc-USP28-1:1
4.1 lnc-USP28-1:1
5.0 lnc-USP28-1:1
5.1 lnc-DRD2-8:1
5.2 lnc-USP28-1:1