Transcript: lnc-USP31-2:2

Basic information

LNCipedia transcript ID: lnc-USP31-2:2 
LNCipedia gene ID: lnc-USP31-2
Location (hg38): chr16:23062385-23064173
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1789 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000563129.1; RP11-20G6.3-001; OTTHUMT00000436062.1; NONHSAT141098
Alternative gene names: ENSG00000260566.1; RP11-20G6.3; OTTHUMG00000177263.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.6434 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP31-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COG7-2:1
4.0 lnc-USP31-2:2
4.1 lnc-USP31-2:2
5.0 lnc-USP31-2:2
5.1 lnc-SULT1A2-200:1
5.2 lnc-USP31-2:2