Transcript: lnc-USP34-1:4

Basic information

LNCipedia transcript ID: lnc-USP34-1:4 
LNCipedia gene ID: lnc-USP34-1
Location (hg38): chr2:61141778-61144950
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2346 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000420918; ENST00000420918.1; AC016747.3-001; OTTHUMT00000325484.1
Alternative gene names: ENSG00000212978; AC016747.3; ENSG00000212978.4; OTTHUMG00000152156.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0064 non-coding 
CPAT coding probability 4.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP34-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP34-1:4
3.1 lnc-USP34-1:4
4.0 lnc-USP34-1:4
4.1 lnc-USP34-1:4
5.0 lnc-USP34-1:4
5.1 lnc-PPP4R3B-81:10
5.2 lnc-USP34-1:4