Transcript: lnc-USP34-1:5

Basic information

LNCipedia transcript ID: lnc-USP34-1:5 
LNCipedia gene ID: lnc-USP34-1
Location (hg38): chr2:61140765-61144941
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3350 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004269; NONHSAT070922
Alternative gene names: XLOC_002111; linc-PUS10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0064 non-coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP34-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP34-1:5
3.1 lnc-USP34-1:5
4.0 lnc-USP34-1:5
4.1 lnc-USP34-1:5
5.0 lnc-USP34-1:5
5.1 lnc-PPP4R3B-81:13
5.2 lnc-USP34-1:5