Transcript: lnc-USP34-1:6

Basic information

LNCipedia transcript ID: lnc-USP34-1:6 
LNCipedia gene ID: lnc-USP34-1
Ensembl Gene ID: ENSG00000212978
Ensembl Transcript ID: ENST00000422740
Location (hg38): chr2:61143568-61144891
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 595 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422740; TCONS_00003298; ENST00000422740.1; AC016747.3-003; OTTHUMT00000325687.2; NONHSAT070931
Alternative gene names: ENSG00000212978; XLOC_002111; linc-PUS10; AC016747.3; ENSG00000212978.4; OTTHUMG00000152156.3; ENSG00000212978.5; ENSG00000212978.6; AC016747.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.6072 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP34-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP34-1:6
3.1 lnc-USP34-1:6
4.0 lnc-USP34-1:6
4.1 lnc-USP34-1:6
5.0 lnc-USP34-1:6
5.1 lnc-PPP4R3B-81:14
5.2 lnc-USP34-1:6