Transcript: lnc-USP34-1:7

Basic information

LNCipedia transcript ID: lnc-USP34-1:7 
LNCipedia gene ID: lnc-USP34-1
Location (hg38): chr2:61141597-61142643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1047 bp
Exons: 1
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000542553; ENST00000542553.1; AC016747.3-201; NONHSAT070924
Alternative gene names: ENSG00000212978; AC016747.3; ENSG00000212978.4; OTTHUMG00000152156.3; ENSG00000212978.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.504 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP34-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP34-1:7
3.1 lnc-USP34-1:7
4.0 lnc-USP34-1:7
4.1 lnc-USP34-1:7
5.0 lnc-USP34-1:7
5.1 lnc-PPP4R3B-81:15
5.2 lnc-USP34-1:7