Transcript: lnc-USP35-7:1

Basic information

LNCipedia transcript ID: lnc-USP35-7:1 
LNCipedia gene ID: lnc-USP35-7
Ensembl Gene ID: ENSG00000254885
Ensembl Transcript ID: ENST00000527440
Location (hg38): chr11:79191558-79193160
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 374 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527440; ENST00000527440.1; RP11-802F5.1-001; OTTHUMT00000391458.1; NONHSAT023308
Alternative gene names: ENSG00000254885; RP11-802F5.1; ENSG00000254885.1; OTTHUMG00000166785.1; AP001547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.7205 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP35-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP35-3:1
3.1 lnc-USP35-7:1
4.0 lnc-USP35-7:1
4.1 lnc-USP35-7:1
5.0 lnc-USP35-7:1
5.1 lnc-DDIAS-37:1
5.2 lnc-USP35-7:1