Transcript: lnc-USP6NL-7:10

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:10 
LNCipedia gene ID: lnc-USP6NL-7
Ensembl Gene ID: ENSG00000225383
Ensembl Transcript ID: ENST00000415590
Location (hg38): chr10:10784437-10794967
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 627 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415590.2; ENST00000415590.6
Alternative gene names: ENSG00000225383.2; SFTA1P; ENSG00000225383.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -325.4913 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:10 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf31-7:12
4.0 lnc-C10orf31-7:12
4.1 lnc-C10orf31-7:12
5.0 lnc-C10orf31-7:12
5.1 lnc-KLF6-131:10
5.2 lnc-USP6NL-7:10