Transcript: lnc-USP6NL-8:7

Basic information

LNCipedia transcript ID: lnc-USP6NL-8:7 
LNCipedia gene ID: lnc-USP6NL-8
Ensembl Gene ID: ENSG00000270111
Ensembl Transcript ID: ENST00000602311
RefSeq ID: NR_120637
Location (hg38): chr10:10419538-10462349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT011364; ENST00000602311.1; NR_120637; NR_120637.1
Alternative gene names: ENSG00000270111.1; RP11-271F18.4; ENSG00000270111.2; AL583859.2; LOC101928322


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.8896 non-coding 
CPAT coding probability 13.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-8:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf31-8:9
4.0 lnc-C10orf31-8:9
4.1 lnc-C10orf31-8:9
5.0 lnc-C10orf31-8:9
5.1 lnc-KLF6-130:7
5.2 lnc-USP6NL-8:7