Transcript: lnc-USP7-1:1

Basic information

LNCipedia transcript ID: lnc-USP7-1:1 
LNCipedia gene ID: lnc-USP7-1
Ensembl Gene ID: ENSG00000260349
Ensembl Transcript ID: ENST00000565648
Location (hg38): chr16:9105834-9107174
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 731 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565648.1; RP11-473I1.5-001; OTTHUMT00000435110.1; NONHSAT140445
Alternative gene names: ENSG00000260349.1; RP11-473I1.5; OTTHUMG00000177053.1; AC087190.2; AC087190.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.3326 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP7-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP7-1:1
4.0 lnc-USP7-1:1
4.1 lnc-USP7-1:1
5.0 lnc-USP7-1:1
5.1 lnc-SEPT12-75:1
5.2 lnc-USP7-1:1