Transcript: lnc-UTP18-1:1

Basic information

LNCipedia transcript ID: lnc-UTP18-1:1 
LNCipedia gene ID: lnc-UTP18-1
Ensembl Gene ID: ENSG00000249982
Ensembl Transcript ID: ENST00000505978
Location (hg38): chr17:51332679-51334090
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 650 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025189; ENST00000505978; ENST00000505978.1; RP11-1018N14.3-001; OTTHUMT00000368658.1; NONHSAT054754
Alternative gene names: XLOC_012248; linc-KIF2B-6; ENSG00000249982; RP11-1018N14.3; ENSG00000249982.1; OTTHUMG00000162373.1; AC005823.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.5918 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UTP18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UTP18-1:1
3.1 lnc-UTP18-1:1
4.0 lnc-UTP18-1:1
4.1 lnc-UTP18-1:1
5.0 lnc-UTP18-1:1
5.1 lnc-EPN3-21:1
5.2 lnc-UTP18-1:1