Transcript: lnc-UTS2-3:2

Basic information

LNCipedia transcript ID: lnc-UTS2-3:2 
LNCipedia gene ID: lnc-UTS2-3
Ensembl Gene ID: ENSG00000237728
Ensembl Transcript ID: ENST00000411708
Location (hg38): chr1:7388183-7389419
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 391 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411708.1; RP3-453P22.2-002; OTTHUMT00000003615.1; NONHSAT000703
Alternative gene names: ENSG00000237728.1; RP3-453P22.2; OTTHUMG00000001219.1; ENSG00000237728.2; Z97987.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -598.4617 non-coding 
CPAT coding probability 10.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UTS2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UTS2-3:2
4.0 lnc-UTS2-3:2
4.1 lnc-UTS2-3:2
5.0 lnc-UTS2-3:2
5.1 lnc-CLSTN1-42:5
5.2 lnc-UTS2-3:2