Transcript: lnc-UXS1-4:1

Basic information

LNCipedia transcript ID: lnc-UXS1-4:1 
LNCipedia gene ID: lnc-UXS1-4
Location (hg38): chr2:105854743-105857177
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 653 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000427050.1; AC009505.2-001; OTTHUMT00000329638.1
Alternative gene names: ENSG00000235522.1; AC009505.2; OTTHUMG00000153117.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 92.2465 coding 
CPAT coding probability 35.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UXS1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UXS1-4:1
4.0 lnc-UXS1-4:1
4.1 lnc-UXS1-4:1
5.0 lnc-UXS1-4:1
5.1 lnc-AFF3-82:1
5.2 lnc-UXS1-4:1