Transcript: lnc-UXS1-4:9

Basic information

LNCipedia transcript ID: lnc-UXS1-4:9 
LNCipedia gene ID: lnc-UXS1-4
Ensembl Gene ID: ENSG00000235522
Ensembl Transcript ID: ENST00000615184
Location (hg38): chr2:105854981-105855755
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615184.1
Alternative gene names: ENSG00000235522.6; AC009505.2; AC010978.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 92.2465 coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UXS1-4:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-UXS1-4:9
4.1 lnc-UXS1-4:9
5.0 lnc-UXS1-4:9
5.1 lnc-AFF3-82:8
5.2 lnc-UXS1-4:9