Transcript: lnc-VAPA-2:1

Basic information

LNCipedia transcript ID: lnc-VAPA-2:1 
LNCipedia gene ID: lnc-VAPA-2
Ensembl Gene ID: ENSG00000265554
Ensembl Transcript ID: ENST00000582470
Location (hg38): chr18:10125340-10144406
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582470.1; RP11-419J16.1-001; OTTHUMT00000442257.1; NONHSAT057256
Alternative gene names: ENSG00000265554.1; RP11-419J16.1; OTTHUMG00000178508.1; AP005271.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.378 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VAPA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAPA-2:1
4.0 lnc-VAPA-2:1
4.1 lnc-VAPA-2:1
5.0 lnc-VAPA-2:1
5.1 lnc-RIOK3-197:1
5.2 lnc-VAPA-2:1