Transcript: lnc-VCAM1-3:1

Basic information

LNCipedia transcript ID: lnc-VCAM1-3:1 
LNCipedia gene ID: lnc-VCAM1-3
Location (hg38): chr1:100923141-100939576
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1334 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_101_chr1:101388696-101405028_adipose
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.6119 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VCAM1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VCAM1-3:1
4.0 lnc-VCAM1-3:1
4.1 lnc-VCAM1-3:1
5.0 lnc-VCAM1-3:1
5.1 lnc-BTBD8-57:1
5.2 lnc-VCAM1-3:1