Transcript: lnc-VCY-1:2

Basic information

LNCipedia transcript ID: lnc-VCY-1:2 
LNCipedia gene ID: lnc-VCY-1
Ensembl Gene ID: ENSG00000223517
Ensembl Transcript ID: ENST00000435111
Location (hg38): chrY:14276212-14277489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017625; ENST00000435111; ENST00000435111.1; AC010723.1-001; OTTHUMT00000088597.1; NONHSAT139517
Alternative gene names: XLOC_008324; linc-VCY-2; ENSG00000223517; AC010723.1; ENSG00000223517.1; OTTHUMG00000036405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.7995 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VCY-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VCY1B-1:1
3.1 lnc-VCY1B-1:1
4.0 lnc-VCY1B-1:1
4.1 lnc-VCY1B-1:1
5.0 lnc-VCY1B-1:1
5.1 lnc-DAZ1-96:1
5.2 lnc-VCY-1:2