Transcript: lnc-VDR-2:1

Basic information

LNCipedia transcript ID: lnc-VDR-2:1 
LNCipedia gene ID: lnc-VDR-2
Ensembl Gene ID: ENSG00000274737
Ensembl Transcript ID: ENST00000614749
Location (hg38): chr12:47817451-47817966
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 516 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614749.1
Alternative gene names: ENSG00000274737.1; RP5-1057I20.6; AC004466.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -148.3904 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VDR-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VDR-2:1
4.1 lnc-VDR-2:1
5.0 lnc-VDR-2:1
5.1 lnc-RAPGEF3-3:1
5.2 lnc-VDR-2:1