Transcript: lnc-VEGFD-1:2

Basic information

LNCipedia transcript ID: lnc-VEGFD-1:2 
LNCipedia gene ID: lnc-VEGFD-1
RefSeq ID: NR_037859
Location (hg38): chrX:15345591-15491309
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2582 bp
Exons: 15
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_037859; NR_037859.2
Alternative gene names: PIR-FIGF


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3546.7759 coding 
CPAT coding probability 99.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VEGFD-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGA-1:2
4.0 lnc-FIGF-1:2
4.1 lnc-FIGF-1:2
5.0 lnc-FIGF-1:2
5.1 lnc-PCSK1N-187:2
5.2 lnc-VEGFD-1:2