Transcript: lnc-VEZF1-1:1

Basic information

LNCipedia transcript ID: lnc-VEZF1-1:1 
LNCipedia gene ID: lnc-VEZF1-1
Ensembl Gene ID: ENSG00000264112
Ensembl Transcript ID: ENST00000585065
Location (hg38): chr17:57989044-57994850
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4722 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414925; TCONS_00025147; ENST00000585065.1; RP11-159D12.2-001; OTTHUMT00000443327.1; NONHSAT054916
Alternative gene names: ENSG00000234873; XLOC_012534; linc-VEZF1; ENSG00000264112.1; RP11-159D12.2; OTTHUMG00000178780.1; AC015813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7969 non-coding 
CPAT coding probability 6.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VEZF1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VEZF1-1:1
3.1 lnc-VEZF1-1:1
4.0 lnc-VEZF1-1:1
4.1 lnc-VEZF1-1:1
5.0 lnc-VEZF1-1:1
5.1 lnc-PTRH2-35:1
5.2 lnc-VEZF1-1:1