Transcript: lnc-VEZF1-1:3

Basic information

LNCipedia transcript ID: lnc-VEZF1-1:3 
LNCipedia gene ID: lnc-VEZF1-1
Ensembl Gene ID: ENSG00000264112
Ensembl Transcript ID: ENST00000577267
Location (hg38): chr17:57989042-57993479
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4056 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025146; ENST00000577267.1; RP11-159D12.2-002; OTTHUMT00000443326.1; NONHSAT054915
Alternative gene names: XLOC_012534; linc-VEZF1; ENSG00000264112.1; RP11-159D12.2; OTTHUMG00000178780.1; AC015813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7969 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VEZF1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VEZF1-1:3
3.1 lnc-VEZF1-1:3
4.0 lnc-VEZF1-1:3
4.1 lnc-VEZF1-1:3
5.0 lnc-VEZF1-1:3
5.1 lnc-PTRH2-35:4
5.2 lnc-VEZF1-1:3