Transcript: lnc-VGLL4-9:3

Basic information

LNCipedia transcript ID: lnc-VGLL4-9:3 
LNCipedia gene ID: lnc-VGLL4-9
Location (hg38): chr3:11202470-11225918
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4836 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000063734.1|ENCT00000300199.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.4216 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VGLL4-9:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VGLL4-9:3
5.0 lnc-VGLL4-9:3
5.1 lnc-SEC13-9:1
5.2 lnc-VGLL4-9:3