Transcript: lnc-VIP-10:1

Basic information

LNCipedia transcript ID: lnc-VIP-10:1 
LNCipedia gene ID: lnc-VIP-10
Ensembl Gene ID: ENSG00000213121
Ensembl Transcript ID: ENST00000392385
Location (hg38): chr6:153231320-153347488
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1212 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000392385.2
Alternative gene names: ENSG00000213121.2; RP11-306O13.1; AL590867.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.3767 non-coding 
CPAT coding probability 98.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VIP-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL590867.1-10:1
4.1 lnc-AL590867.1-10:1
5.0 lnc-AL590867.1-10:1
5.1 lnc-ESR1-11:1
5.2 lnc-VIP-10:1