Transcript: lnc-VIP-3:1

Basic information

LNCipedia transcript ID: lnc-VIP-3:1 
LNCipedia gene ID: lnc-VIP-3
Location (hg38): chr6:153131474-153132254
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 781 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000086610.1|HBMT00001241011.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -160.3011 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VIP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL590867.1-3:2
5.0 lnc-AL590867.1-3:2
5.1 lnc-ESR1-10:1
5.2 lnc-VIP-3:1