Transcript: lnc-VIRMA-1:10

Basic information

LNCipedia transcript ID: lnc-VIRMA-1:10 
LNCipedia gene ID: lnc-VIRMA-1
Ensembl Gene ID: ENSG00000261437
Ensembl Transcript ID: ENST00000562760
RefSeq ID: NR_034034
Location (hg38): chr8:94637285-94639467
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2183 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000562760.1; RP11-22C11.2-001; OTTHUMT00000422906.1; NONHSAT127787; NR_034034; NR_034034.1
Alternative gene names: ENSG00000261437.1; RP11-22C11.2; OTTHUMG00000173368.1; AC108860.2; LOC100288748


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.0275 non-coding 
CPAT coding probability 34.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VIRMA-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1429-1:1
4.0 lnc-KIAA1429-1:1
4.1 lnc-KIAA1429-1:1
5.0 lnc-KIAA1429-1:1
5.1 lnc-ZNF706-151:10
5.2 lnc-VIRMA-1:10