Transcript: lnc-VIRMA-6:1

Basic information

LNCipedia transcript ID: lnc-VIRMA-6:1 
LNCipedia gene ID: lnc-VIRMA-6
Location (hg38): chr8:94706461-94708643
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2183 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_4351_NR_034034
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.9315 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VIRMA-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1429-6:1
4.0 lnc-KIAA1429-6:1
4.1 lnc-KIAA1429-6:1
5.0 lnc-KIAA1429-6:1
5.1 lnc-ZNF706-149:1
5.2 lnc-VIRMA-6:1