Transcript: lnc-VLDLR-1:1

Basic information

LNCipedia transcript ID: lnc-VLDLR-1:1 
LNCipedia gene ID: lnc-VLDLR-1
Ensembl Gene ID: ENSG00000231052
Ensembl Transcript ID: ENST00000445631
Location (hg38): chr9:2541097-2541635
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 206 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015640; ENST00000445631; ENST00000445631.1; RP11-91N2.3-001; OTTHUMT00000051518.1; NONHSAT130001
Alternative gene names: XLOC_007267; linc-VLDLR-1; ENSG00000231052; RP11-91N2.3; ENSG00000231052.1; OTTHUMG00000019446.1; AL353614.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.5342 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VLDLR-1:1 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VLDLR-1:1
3.1 lnc-VLDLR-1:1
4.0 lnc-VLDLR-1:1
4.1 lnc-VLDLR-1:1
5.0 lnc-VLDLR-1:1
5.1 lnc-RECK-289:1
5.2 lnc-VLDLR-1:1