Transcript: lnc-VMO1-1:1

Basic information

LNCipedia transcript ID: lnc-VMO1-1:1 
LNCipedia gene ID: lnc-VMO1-1
Location (hg38): chr17:4787057-4790734
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2802 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000510649
Alternative gene names: ENSG00000249874


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.533 non-coding 
CPAT coding probability 83.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VMO1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VMO1-1:1
3.1 lnc-VMO1-1:1
4.0 lnc-VMO1-1:1
4.1 lnc-VMO1-1:1
5.0 lnc-VMO1-1:1
5.1 lnc-PHF23-55:1
5.2 lnc-VMO1-1:1