Transcript: lnc-VN1R1-1:3

Basic information

LNCipedia transcript ID: lnc-VN1R1-1:3 
LNCipedia gene ID: lnc-VN1R1-1
Location (hg38): chr19:57429657-57435152
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3792 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000041508.1|ENCT00000217969.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.1309 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VN1R1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VN1R1-1:3
5.0 lnc-VN1R1-1:3
5.1 lnc-ZNF772-2:2
5.2 lnc-VN1R1-1:3