Transcript: lnc-VN1R2-1:1

Basic information

LNCipedia transcript ID: lnc-VN1R2-1:1 
LNCipedia gene ID: lnc-VN1R2-1
Location (hg38): chr19:53223909-53224650
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027618; NONHSAT067649
Alternative gene names: XLOC_013142; linc-VN1R2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1589 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VN1R2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VN1R2-1:1
3.1 lnc-VN1R2-1:1
4.0 lnc-VN1R2-1:1
4.1 lnc-VN1R2-1:1
5.0 lnc-VN1R2-1:1
5.1 lnc-CACNG8-23:1
5.2 lnc-VN1R2-1:1