Transcript: lnc-VN1R2-5:3

Basic information

LNCipedia transcript ID: lnc-VN1R2-5:3 
LNCipedia gene ID: lnc-VN1R2-5
Location (hg38): chr19:53197107-53200709
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 242 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA684:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.6666 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VN1R2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VN1R2-5:3
4.1 lnc-VN1R2-5:3
5.0 lnc-VN1R2-5:3
5.1 lnc-CACNG8-24:8
5.2 lnc-VN1R2-5:3