Transcript: lnc-VNN2-2:3

Basic information

LNCipedia transcript ID: lnc-VNN2-2:3 
LNCipedia gene ID: lnc-VNN2-2
Location (hg38): chr6:132728912-132730660
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 558 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT114971
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.4857 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VNN2-2:3 yes no no no

Available literature

  1. Bai (2014), Long non-coding RNA NR_045623 and NR_028291 involved in benzene hematotoxicity in occupationally benzene-exposed workers., Exp. Mol. Pathol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VNN2-2:3
4.0 lnc-VNN2-2:3
4.1 lnc-VNN2-2:3
5.0 lnc-VNN2-2:3
5.1 lnc-OLIG3-82:1
5.2 lnc-VNN2-2:3