Transcript: lnc-VPREB1-29:1

Basic information

LNCipedia transcript ID: lnc-VPREB1-29:1 
LNCipedia gene ID: lnc-VPREB1-29
Ensembl Gene ID: ENSG00000278657
Ensembl Transcript ID: ENST00000620649
Location (hg38): chr22:22036344-22040065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 780 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620649.1
Alternative gene names: ENSG00000278657.1; LL22NC03-23C6.13; AC245452.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VPREB1-29:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-LRRC74B-28:1
5.1 lnc-LRRC74B-28:1
5.2 lnc-VPREB1-29:1