Transcript: lnc-VPS18-1:4

Basic information

LNCipedia transcript ID: lnc-VPS18-1:4 
LNCipedia gene ID: lnc-VPS18-1
Location (hg38): chr15:40906811-40909342
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000503052.2; RP11-540O11.1-001; OTTHUMT00000418857.1; NONHSAT041896
Alternative gene names: ENSG00000251161.2; RP11-540O11.1; OTTHUMG00000172510.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.2018 non-coding 
CPAT coding probability 9.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS18-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VPS18-1:4
4.0 lnc-VPS18-1:4
4.1 lnc-VPS18-1:4
5.0 lnc-VPS18-1:4
5.1 lnc-TMEM62-39:5
5.2 lnc-VPS18-1:4