Transcript: lnc-VPS18-1:5

Basic information

LNCipedia transcript ID: lnc-VPS18-1:5 
LNCipedia gene ID: lnc-VPS18-1
Location (hg38): chr15:40907485-40909356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 857 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023924; NONHSAT041897
Alternative gene names: XLOC_011223; linc-DLL4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.5221 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS18-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VPS18-1:4
3.1 lnc-VPS18-1:5
4.0 lnc-VPS18-1:5
4.1 lnc-VPS18-1:5
5.0 lnc-VPS18-1:5
5.1 lnc-TMEM62-39:7
5.2 lnc-VPS18-1:5