Transcript: lnc-VPS50-1:6

Basic information

LNCipedia transcript ID: lnc-VPS50-1:6 
LNCipedia gene ID: lnc-VPS50-1
Location (hg38): chr7:92836489-92917123
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 407 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237819.1|ENST00000452050.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.4441 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS50-1:6 yes no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.
  2. Wang (2015), Genome-Wide Microarray Analysis of Long Non-Coding RNAs in Eutopic Secretory Endometrium with Endometriosis., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC132-1:7
5.0 lnc-CCDC132-1:7
5.1 lnc-LAMTOR4-100:6
5.2 lnc-VPS50-1:6