Transcript: lnc-VPS54-4:2

Basic information

LNCipedia transcript ID: lnc-VPS54-4:2 
LNCipedia gene ID: lnc-VPS54-4
Location (hg38): chr2:64108379-64144396
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 526 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT071090
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.7898 non-coding 
CPAT coding probability 2.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS54-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VPS54-4:2
4.0 lnc-VPS54-4:2
4.1 lnc-VPS54-4:2
5.0 lnc-VPS54-4:2
5.1 lnc-GKN2-119:2
5.2 lnc-VPS54-4:2