Transcript: lnc-VPS54-8:1

Basic information

LNCipedia transcript ID: lnc-VPS54-8:1 
LNCipedia gene ID: lnc-VPS54-8
Location (hg38): chr2:63552516-63554702
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2187 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT071060
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1996 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS54-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VPS54-8:1
4.0 lnc-VPS54-8:1
4.1 lnc-VPS54-8:1
5.0 lnc-VPS54-8:1
5.1 lnc-GKN2-138:1
5.2 lnc-VPS54-8:1