Transcript: lnc-VPS8-2:8

Basic information

LNCipedia transcript ID: lnc-VPS8-2:8 
LNCipedia gene ID: lnc-VPS8-2
Location (hg38): chr3:184734059-184739079
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 847 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00006337
Alternative gene names: XLOC_002952; linc-VPS8-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.435 non-coding 
CPAT coding probability 25.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS8-2:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B5-2:8
3.1 lnc-EIF2B5-2:8
4.0 lnc-EIF2B5-2:8
4.1 lnc-EIF2B5-2:8
5.0 lnc-EIF2B5-2:8
5.1 lnc-FAM131A-15:8
5.2 lnc-VPS8-2:8