Transcript: lnc-VRK2-7:1

Basic information

LNCipedia transcript ID: lnc-VRK2-7:1 
LNCipedia gene ID: lnc-VRK2-7
Ensembl Gene ID: ENSG00000231815
Ensembl Transcript ID: ENST00000415159
Location (hg38): chr2:59435213-59442261
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 438 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002900; ENST00000415159; ENST00000415159.1; AC007179.1-001; OTTHUMT00000327021.1; NONHSAT070878
Alternative gene names: XLOC_001488; linc-PAPOLG-1; ENSG00000231815; AC007179.1; ENSG00000231815.1; OTTHUMG00000152616.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.8828 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VRK2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VRK2-7:1
3.1 lnc-VRK2-7:1
4.0 lnc-VRK2-7:1
4.1 lnc-VRK2-7:1
5.0 lnc-VRK2-7:1
5.1 lnc-PAPOLG-30:1
5.2 lnc-VRK2-7:1