Transcript: lnc-VSIG10L2-2:1

Basic information

LNCipedia transcript ID: lnc-VSIG10L2-2:1 
LNCipedia gene ID: lnc-VSIG10L2-2
Location (hg38): chr11:125927116-125928829
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1714 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000583165.1; RP11-680F20.11-001; OTTHUMT00000447230.1; NONHSAT024988
Alternative gene names: ENSG00000263906.1; RP11-680F20.11; OTTHUMG00000179593.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.288 non-coding 
CPAT coding probability 7.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSIG10L2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX25-1:1
4.0 lnc-DDX25-1:1
4.1 lnc-DDX25-1:1
5.0 lnc-DDX25-1:1
5.1 lnc-HINFP-99:1
5.2 lnc-VSIG10L2-2:1