Transcript: lnc-VSIG2-1:1

Basic information

LNCipedia transcript ID: lnc-VSIG2-1:1 
LNCipedia gene ID: lnc-VSIG2-1
Ensembl Gene ID: ENSG00000255045
Ensembl Transcript ID: ENST00000531241
Location (hg38): chr11:124744634-124746337
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 445 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531241.1; RP11-677M14.2-001-001; OTTHUMT00000387080.1; NONHSAT024895
Alternative gene names: ENSG00000255045.1; RP11-677M14.2-001; OTTHUMG00000165929.1; RP11-677M14.2; AP000866.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.8658 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSIG2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSIG2-1:1
4.0 lnc-VSIG2-1:1
4.1 lnc-VSIG2-1:1
5.0 lnc-VSIG2-1:1
5.1 lnc-ADAMTS8-68:1
5.2 lnc-VSIG2-1:1