Transcript: lnc-VSIG8-2:3

Basic information

LNCipedia transcript ID: lnc-VSIG8-2:3 
LNCipedia gene ID: lnc-VSIG8-2
Location (hg38): chr1:159809991-159826564
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 676 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000079334.1|FTMT20100039071.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -104.3613 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSIG8-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf204-2:3
5.0 lnc-C1orf204-2:3
5.1 lnc-TAGLN2-5:2
5.2 lnc-VSIG8-2:3